Scaffold Ga0157138_1000030

Overview

Basic Information

• Taxon OID: 3300012352
• Scaffold ID: Ga0157138_1000030
• Source Dataset Name: Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39181
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (60.32%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Fraserville, Ontario
• Coordinates
  • Lat. (^o): 44.16961
  • Long. (^o): -78.4089

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002997	Metagenome / Metatranscriptome	514	Y
F003265	Metagenome / Metatranscriptome	496	Y
F006660	Metagenome	367	Y
F007518	Metagenome	349	Y
F023109	Metagenome / Metatranscriptome	211	Y
F026565	Metagenome / Metatranscriptome	197	Y
F043944	Metagenome	155	Y
F050321	Metagenome / Metatranscriptome	145	Y
F054875	Metagenome	139	Y
F087188	Metagenome / Metatranscriptome	110	N
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_100003023	F087188	N/A	MSQIFKADCYFQQEQYNPRIRATVPPAWVIEFDCALPNTNVPPVFFGITRKEAIQNAIDCLKSRGFTGRLILN*
Ga0157138_100003036	F050321	N/A	MITFDKWYPLVQPTHTATQLAFEKAVEKVQEEYRYAVAANKLEFKTREVEIELYDKRARQNIIDLGSFENRRRFQIFV*
Ga0157138_100003037	F003265	N/A	MRWFFALLIGWMFWANAKAPCVVTDFYGLSWLHNPSERHQRLSEWLTTNGNNCSSEELVGIWNNLPMWAGVADSAELRSKILFYYARAVEREKK*
Ga0157138_10000304	F092064	N/A	MKKAPKQIIGFLRNPETWNADAFETAIRNEVENSTGALTASDELLVGSLVLVVDTLVEAHMGLLENGAIYHYNAGDAPSPYYKIRTESMDKAIKILAELALVARGRPKIKNKVSEVDELFATA*
Ga0157138_100003045	F026565	GGA	MAIFNKNTLLQVSGFDNEIIAGELVWQQKTYWNLTMTAADGTTPIDLTGATIDAQIVRRSVTNIQDTRNGLSFDIANYTPAPTPVTMTIANRNNATGFFTLVIDDTTWSLINSDPELDINAVDCVGFSGRIKIGFPANATNPQDDSIIFLLFLVRSDGIVVV*
Ga0157138_100003048	F023109	N/A	MIRKATRYDIPRLLEIVEAYAFENPITVLGKQVNHDAKYVESLLFGIIMGRGFIYIDNHMRGAIIGIKNQNIWCPKVRELNELLWWVEPEYRNGTIGGRLWKAFDDEANEMLKRGDVHCAITSISASGPLIDYTKRGYMPIGASFVKE*
Ga0157138_100003050	F006660	GGAG	MSFQTIFEIQQSMSVQNRRTVGQQVSRSGQVRVAQYLTSVPWVFTVTPHSYLYYPQVRDVIQTIDNKDRQLPETISFASQNLSWFTAYQGDLTTEQVNALTLASVPAANSQTITVGNLPSVASTAYIFKAGDFLQLGLYPYKVTTDVLRGSASTVSVTLHRPVIGTTTVGTLTAVGNACTFYMLAEQCPTYTLMPAPSGAFVQWDDAFVFREDITG*
Ga0157138_100003052	F043944	N/A	MVFNGHTPDSIAEIDDITMANIQTMYADGLIGNYGLLTQIANLTNGVFNYMRPPNSPLYKLANILGSAYDYIYPPLTKEQEKAAVNDSLIGFISQAQGFNKTKFGVKDG*
Ga0157138_100003053	F054875	AGG	MTKFSSAFGDKYQSNKKNLLTRTFELGGHIFKVRIPLVAESEAIYQKVANPDEVTIDRIYHLITAPLQQFKDNQTEEFKFTENDILVDGRSMREAAKNKAITEARITEFFKLLVPELEGASFEDLTYKDIEEEFPISVQMQIVEKIGEVISPTYKEARGN*
Ga0157138_100003058	F002997	N/A	MAIKRFENIDINNLTFGKSSFGEQSTTQTKWFATRALVGDVSNSVRISEKYRLYQDLVNFTLNYTPNMKTIVDSQQLYSIRWRNADWRITDARESNDRMRVTFMCYRSDPVTSV*
Ga0157138_10000309	F007518	AGGGGG	MTDWTKEEDEAFNEVERNSNLGKQILRDMEGQPYHYDLFVSPSQRNQVLEEVAKELEKFTNFGDTAASFAQYVRSLKK*