Scaffold Ga0157138

Basic Information
Taxon OID	3300012352 Open in IMG/M
Scaffold ID	Ga0157138_1000015 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012352 Open in IMG/M

Scaffold ID

Ga0157138_1000015 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61459
Total Scaffold Genes	103 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	81 (78.64%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

61459

Total Scaffold Genes

103 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

81 (78.64%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Fraserville, Ontario
Coordinates	Lat. (^o)	44.16961	Long. (^o)	-78.4089	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Fraserville, Ontario

Coordinates

Lat. (^o)

44.16961

Long. (^o)

-78.4089

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F001464	Metagenome / Metatranscriptome	689	Y
F004006	Metagenome / Metatranscriptome	457	Y
F015600	Metagenome / Metatranscriptome	253	Y
F018162	Metagenome / Metatranscriptome	236	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157138_1000015103	F018162	N/A	VIAARPRWTDESYATRIAISQLIGDQWNMETGWGLAVNSILDNEHKIPIIDWNQQTFSLHEEADFRDETNKIRGMKNEAIFVMDLSTFCEKYALDNILVN*
Ga0157138_100001514	F001464	GAG	MARSKRRKVQKKFLYFFLNDKVHKVLSRSRAKDELIAWCYPDGKRVLYSLSLVEKSMKNAYSTAEVAKILNRHKVTIEDYIIEGKIRTPQIVYPIGNPESKWYKFMFSESDVMDVHQFILDAGYTNTLPSKAELQAILKHNLILYTKTEEGNFVPVWKAE*
Ga0157138_100001522	F004006	AGGA	MTENIEDLVKSVSLNQILVAILEEQGKITVPTLRFLDAKNDDKELVIDYDSEALSFTFSLRSNNEQQ*
Ga0157138_100001557	F000473	GAG	MFIDKSLSKQNEHFKHGINQWTGEPNKPVFYTDEMKKKVRELKQPMFLLMDIAMYPDFLAIRLYEDNFIQFDGIEKEKVIDYVSKVKSLLESYGVRCELEGVPSERVV*
Ga0157138_100001565	F042904	N/A	MDSKQTVLEGIIEDVATDLYNKWVAAMPEEDKNEIAFQALSKNAHETTLFVVQNFMNKFNDAAEALKGE*
Ga0157138_100001597	F015600	AGGA	MEPTPDYNIPIHIQRMIDAGESGTDILHGELKNLMLEAEQEFTEIATEEEEDGYSDAMLSMERTRAEGRLDALVEIYNLTYQLAFAISERRANANI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157138_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences