Scaffold Ga0137372_10011983

Overview

Basic Information

• Taxon OID: 3300012350
• Scaffold ID: Ga0137372_10011983
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8293
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F003228	Metagenome / Metatranscriptome	499	Y
F007596	Metagenome	348	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137372_1001198310	F002560	AGGAGG	MVEHNPPSSADSARAPVIPLPVALYVSDGLIFELYDGGQPCRSFSIRWERLVPTRKDQPETVSPNPQAASRTRRD*
Ga0137372_1001198311	F000208	GAG	MAMRIRVTTRADLYEKRKQQHLERGYRIEDERPIPVNGFCSFVAVRELPASDTLADLVAEALNGNHAAHGDW*
Ga0137372_1001198312	F007596	GAGG	MSLKIRFRFDGRCTRHPRYDPKRDGRPSDGKCEGCESLYVIHLYTKIAKRRAENENGIVVRTSSGREEPRAIDEFRQLSNTENK*
Ga0137372_100119833	F003228	AGGA	MGQNQHDNSEPLDAQQAAAKAAILAECEKLTAVGIRFVAVHFDGYGDEGTTEEMKCYDTEWYAADEHEPVKYDASHLQEHFESLVPVGYENDCGGFGDVILNVNARKLTVERNDRFEDYTTTTYEV*