Scaffold Ga0137372

Basic Information
Taxon OID	3300012350 Open in IMG/M
Scaffold ID	Ga0137372_10007791 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012350 Open in IMG/M

Scaffold ID

Ga0137372_10007791 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10362
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (40.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

10362

Total Scaffold Genes

15 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (40.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.5673	Long. (^o)	-123.4758	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

39.5673

Long. (^o)

-123.4758

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F004426	Metagenome	438	N
F013075	Metagenome	274	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0137372_100077912	F013075	GAG	LGELDASNWKNLKVAKNASRVDPAIREIVSSLNDNGYKTFSCCSGGHRSNLRRRFDRHESGYIAFSPPSRIPFALYITLRERNQDFMFEAEAVIHDGNGDRRETFYTQLDWQLLDQRKPKLRYYENLFSEIQDAIDSLPRRQDGHKDVLTGLLGKPHLRLGSKIVSGQMKRFTR*
Ga0137372_100077918	F001047	GGA	MRETIFDESYNVREVLDDVIERVALREKLLGTAKQFAEKKREDKFTLAIKQFENLMVDFLRLYQPILDRLRSYREGMQKEIATLRSSLATVNGMLEVSKGIEGLAPRIQQLEANGQELDANINEKMKMANKIDDLFNRVRPFQAGGAGPMGRDSLSDVLAGMPKDLFPETPEPANEKTRKTGTRN*
Ga0137372_100077919	F004426	N/A	MWGEATRVEIKISDSGSQIEYEEWGHGMDLDGLREFLTKGKTTGEGFSPKYKRPIRESYGMGSLAWLTLGRELELQVHKGRFDRTIMLTESLIDRRWAPTDQSTWKPLRLIQAPLDHDGLRIRIRSLTKKTDPGEVRRALLARANVLALRGYGPFEVFVNGEAVKPEELRGATLLPVNIATEYGKVTGEVLILPISKTRAGISEAGMSVQQKHITCLQHQFFGLDQYRIHGLSRIQGWVNADFLRRLPGGNEFERDSAQWRVFEKAMRGFVRNKVLKFLRQTASRRELRSIQYLNREIAERLRRSIRRNIEILSRAIVKAKTSSKPSQTAHHVAKKENGSANRRDRKSKSHPRDATRSVIHLKDQVLAFDIAHGGDRGQAYVETDKNGARTVFVNMDHPMWNVEASMTPTKLRYCIRQILERSIAEDILPANPSTPEEAYSVLDALYNDALA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0137372_10007791

Overview

Ecosystem & Geography

Associated Families

Sequences