Scaffold Ga0137372_10005702

Overview

Basic Information

• Taxon OID: 3300012350
• Scaffold ID: Ga0137372_10005702
• Source Dataset Name: Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12154
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.5673
  • Long. (^o): -123.4758

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F000828	Metagenome / Metatranscriptome	872	Y
F010187	Metagenome / Metatranscriptome	307	Y
F012059	Metagenome / Metatranscriptome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137372_1000570210	F012059	GAGG	MKKQYLHLSTYSCDKCTGPVVAGSLAVRENEISKETDIRQVGAICLSCGHRQSKVTEAGVTRNFPPVQWEPIRPIGASRIPTTLGEMLNRAELAASLRVASVL*
Ga0137372_100057023	F000042	AGTAGG	MKNIKFVVKVNRGGTRAPEYVERIDRTPVRTTTHRRLALIMGRFTAEDAVKSIENSRCNPELVPVQV*
Ga0137372_100057025	F000828	N/A	MVQVKETARSIFEEQYRVVAVESDRLLVRGVLSGEVLTIVNPEPETPLRQEDYPTGKLIALTDPSTAPLN*
Ga0137372_100057027	F010187	AGGAGG	MHPKDLMRPDLFSEIVLLGSGALMFVSLLLIIVTALTRA*