NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0137372_10005046

Scaffold Ga0137372_10005046


Overview

Basic Information
Taxon OID3300012350 Open in IMG/M
Scaffold IDGa0137372_10005046 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12874
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.5673Long. (o)-123.4758Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029073Metagenome189Y
F072144Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0137372_1000504613F072144N/AMKLNFLEEIGGVKTARREAESLVLATALLKNDEISVKDEDRMLKLAKKNKVLLRAANLIHLPSNVVDEAKKDAAEAFDLYDQMSNIFTQHGVSFVAIKSFDSLPDIGHDIDLLVPSPTELAETEKLLINQYKVQPQGLTHCDRLLGKFSCFLPGYKHDFELYPTISQLGETHLDPSQVLLHRKKETVEGHEVWMTSDSDRVLIRVIHAMFRHNFLKLSDILDFLKLIETASSQEVLEKIDRALIGDAFIFYLASIERFLKACRVENLRFQELKKLAQERFGDDRLRFLRRDRLVLPYRIPTAAIIILFLVKAARDAARARWKSSIS
Ga0137372_100050462F029073GAGGMDQKRRTEILLVSQTIFITLLLYWMFLESQSNAYFREWLSQYFPLGLVLLNGWIVALAITELALVTGFLIGRLEGGPAASKPRVRKIEKIDEPFREPRLDPRPARQREPHFSRSTRIYEIVDLKVLIIMLMLATQAISLWLITASNLRITTFTANSFYYYSHLPLTYWWGLTATLALIFTRPILRGRTRIGLDMGALFLLVFYLIGIPSFTYQDPRFLDTYYHTGNSLDLLNYQGWLTSPNWYVHQFPGVFSFIGQLVSVAGIDPFQLMRFYPLGLALVIVFLTYVIVRMHSDQYASIASATLLGGLWFQLHISPQSLELILYLGALFLLLKVIEDEPRRRLWTVLGLASTPIFVASHPETPLAVSLGLAAFLALSLLKSKRTLQLHTLKIALPLAVLIGWILFWWGLVAVDARDLVQRSILDRALTYFSQLPSGISTQTSNVPAVPSYSYGLTVLSEQAISAIVWATGLAYFVLVRKLQPRELFMGGLFLAAVSTIPVAVFGRADVLQRSYLFALFPAIILTAWLLERRTVLTLRGRNLFRLVKVGFIVMMVLFSAIIPLTRYGVDPIEYIPSSSLYVSNISSGLTQQHSLLFLHPDEDGWRFYAGINGAVREPKLEQKNLANQPGGYVKPGTDPTVPGFNLTYTPADGSANYVVLTTYWQNLYTLRFGSNSAIYIQARNNYTDIVMQNFNLVYSTGTDQIYANQALG*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.