Scaffold Ga0137387_10000237

Overview

Basic Information

• Taxon OID: 3300012349
• Scaffold ID: Ga0137387_10000237
• Source Dataset Name: Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22580
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (59.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005236	Metagenome / Metatranscriptome	407	Y
F015713	Metagenome	252	N
F030713	Metagenome / Metatranscriptome	184	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0137387_1000023719	F015713	GAG	VKFSWHDVAEDVEKHAHKLAEDIFALEPDVTEEVDLKALFERILAKEDWTDKLAARLERFMGFFHRPQKETDLPEDLKLLIPDMRDVERAYMDITSGYKDFIKAVWEAQHERQWRE*
Ga0137387_100002375	F030713	GAG	MTEKKRLPPWEEAKLVFKMQEETRKRKLLEEDMQRRIGRAKRVGPNTSDELEENRKRLRALQERIEQEDYP*
Ga0137387_100002378	F005236	AGCAG	MGFLSIMGKILIGLAVLVLPVAVSLILVFSETLTTIGVAISLGASIFVFFCGIYAGFLGIKYERLQQKFESFVNPLRIRPNAVNLIKAICPRDHERVVFVDVSPHRDDARPDGLDIFLGSCGHEVHREEIEVKQRVDSAN*