Scaffold Ga0157140_10003250

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10003250
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1791
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034147	Metagenome / Metatranscriptome	175	Y
F059884	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_100032502	F059884	N/A	MLLVGRTKVPYEQLFCLSRKELKALIKGHEIDQKDIIEAMRVQAVIGLHPHLKKGANLDPTRLWPLPWDNVVKPLESTPQDFAKAKKLLEIASKLERNGKSKNRG*
Ga0157140_100032503	F034147	N/A	MAKYHSAPFKEGEIFFYPNLGALANFEDFTGLGIASAFDGQAIPKIDLIYALLHECHKVACLRKSTSPVSLDELKVWVEGKDVMKLFNEVLADLLLELGIGESQEKKT*