Scaffold Ga0157140

Basic Information
Taxon OID	3300012348 Open in IMG/M
Scaffold ID	Ga0157140_10000423 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012348 Open in IMG/M

Scaffold ID

Ga0157140_10000423 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5165
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

5165

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Coldwater, Ontario
Coordinates	Lat. (^o)	44.58751	Long. (^o)	-79.6655	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Coldwater, Ontario

Coordinates

Lat. (^o)

44.58751

Long. (^o)

-79.6655

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F061796	Metagenome	131	N
F066791	Metagenome	126	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_100004236	F066791	AGGCGG	MATTHPLLVEFDVPEPRPQKGRLAIAGDGTQWDMYYSSNVWQDPATLTVMLAPLPVTSAWATTYSGNYARYQKSDYTLTTAAKWKNIQIKASGDYYLQSLDVTERATLTTAWAANTGAYVSMYVPGLKDSDKSIIIKCGWGVGSAGSVEVWFAADGAAQVLKNGIVVGTYDRGDSNVQPNVGTQSPKSQRSDFVSFMIIPGRRREIIVASTNGSNFSHVFEDLNPLIANTILPNAAFSWLVPTGQATVQVSRVFYETSGYVLTPIKQLRYAPPTGATFANLTSVEIMGNGTFGYTPSVVKTDGTTYTPNGSISQVRGKVAFTGAGTGSNGILSVDLYYDPELTATYDGTVDVTEYIKTLSLSVDEQGKATCDLSAIAKQIVDAGVEQPQVTSDRTIRVALGDDTTPTPVYIDLFRGTLEPPKIEYLDRDTTYQWATYRWNGVDRSRDFDLAWIVECVPYDGVAAINAIIDLMLIAGYDANIYYYGDTPLLDLPYTTNISKGQYTLAPDYGDTVGSYLEKIKQDYYATWITGWIPDTAGYFYRWLDVASASTTPAMNLYQSTAAAAAAGVPADLQPKRVIRKLSSYYEPPEATQVTVIGQDPNTGIWIPYTQIDGAAEIADTPPASRPRNWRGRPVPFQYRDPSLTTADAVQTAAQILFSRLTPGRTMIEWESDLLILSGNNRPLWLGDVIQLYQPDGVTAQGVYRIIAIPSIDFEQENVAGNSTLFNVRRAVYRAVDVS*
Ga0157140_100004237	F061796	GGTGG	MAYLDGTRTATLTMSHTQNVLVRIWNPFATQPLEPDYDTHYTNFTFGGHLGFSGSLAIVSTVVAPSPGSAWTWELRANITVNNGHG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157140_10000423

Overview

Ecosystem & Geography

Associated Families

Sequences