Scaffold Ga0157140_10000338

Overview

Basic Information

• Taxon OID: 3300012348
• Scaffold ID: Ga0157140_10000338
• Source Dataset Name: Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5802
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Coldwater, Ontario
• Coordinates
  • Lat. (^o): 44.58751
  • Long. (^o): -79.6655

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038245	Metagenome / Metatranscriptome	166	Y
F045760	Metagenome / Metatranscriptome	152	N
F053790	Metagenome / Metatranscriptome	140	Y
F070116	Metagenome / Metatranscriptome	123	N
F078719	Metagenome / Metatranscriptome	116	Y
F099303	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000033810	F045760	AGGAG	MASVSKSKQAYSALYKSSTRWATNRKIKLTRLLKQQPNNEQIKDALANIKYRRHTPNSKTVWSHSNIRLAKLFKEFTGRASADLFSSNPKVQAAALSYRPDPDKLKVIEGKVNFSLGARAHDSKGNFIWK*
Ga0157140_1000033811	F038245	AGGA	MKIYFGNANEDFFADGLYTLGDNQYYYGVEHGTNPGGMDEVSIFDGCNRFLPVHMEAIPELIAALQEIQKIQETISEARQLSARAESNIEGAVTEAWEDYYEVDFDQE*
Ga0157140_1000033812	F053790	GGAG	MSERIYVCVVCGHQLSEADWLSLPDEVNCPECGVSKHDYVLME*
Ga0157140_100003387	F070116	N/A	MSKFNTWDSTELSDAVKISLQIRTKIEEMCLTAMVSPDDLPNSLIPTSNLYKLVCAYEAAYAELLAQDLVRTGNPKTNKKIH*
Ga0157140_100003388	F099303	N/A	MKFLEFTYTKADGTQSKRAVIELVTPTQFVEGIDVSGLDQDSFADFCREFSALKADQHNQTMEKLAQYDLKHSYRRFIPEQMSDVTHDYV*
Ga0157140_100003389	F078719	AGG	MEIIELYLLFALTTGISSCVIFLAPAIAEAKFIGIENSFTENTWISYLTYVVITSFFAPFTVLPIFIPSFAERFKTGIGRAVFESQT*