Scaffold Ga0157140

Basic Information
Taxon OID	3300012348 Open in IMG/M
Scaffold ID	Ga0157140_10000142 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012348 Open in IMG/M

Scaffold ID

Ga0157140_10000142 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9123
Total Scaffold Genes	25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (24.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9123

Total Scaffold Genes

25 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (24.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Coldwater, Ontario
Coordinates	Lat. (^o)	44.58751	Long. (^o)	-79.6655	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Coldwater, Ontario

Coordinates

Lat. (^o)

44.58751

Long. (^o)

-79.6655

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011226	Metagenome / Metatranscriptome	293	Y
F011227	Metagenome / Metatranscriptome	293	Y
F043829	Metagenome	155	Y
F047481	Metagenome / Metatranscriptome	149	Y
F052371	Metagenome	142	Y
F093533	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000014213	F043829	N/A	MKESLPKWGDLTTFERHKLLGELIDSMIYSGEAVQHLKITVEQFRLMGFIRSVILPQNEEQ*
Ga0157140_1000014217	F093533	AGCAGG	MPSDRIEMTLAVKGEVRATAFPLRNHECIERQRRQWYYFYGLKSMQDWEIYISHISPMKENTPFRIEKTFPYLTKSQQNDTTTESKPVSLYCEPVNLAGGLVQTVGKRQSEVL*
Ga0157140_1000014224	F052371	N/A	LTNSEELDLEKFKLSRTSQPIASLSTALVIDELINGMQKLGVKGDKMPNNADLLLMYKSIMEEYPNIKIGEISLAFDLAAKGKLDLDAETYQNFSMLYLHRLLRSFARYGMQKLNEIKPVQESKWQPRFVTDDEKIETAFDCYSKFKQWDNIVFGIDVFHILHKRGKIIVEVEDTYDKVIKAMNDRMFEGSRQDKIDIKNKLADDDYLEHQCMRMAVSCYFDKILKEK*
Ga0157140_100001423	F011226	GGA	MLSXXXXAEYLQVTGINDNYESSATNYWQLFTKVVDAEGVESMGEQVSQGNLTIDGQDYINWGDQPAMSINDWIYNWSAAQLNLTII*
Ga0157140_100001424	F011227	N/A	MTLIELKAQAYDIIAQIEYLQEQLKETNAKIGEELQKEKTENG*
Ga0157140_100001425	F047481	GAG	MDSKSIAMCTATILIKMWADIALSDVGVVVAILAGLSTIVYNVYRMYKELKS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157140_10000142

Overview

Ecosystem & Geography

Associated Families

Sequences