NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157140_10000105

Scaffold Ga0157140_10000105


Overview

Basic Information
Taxon OID3300012348 Open in IMG/M
Scaffold IDGa0157140_10000105 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11950
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameColdwater, Ontario
CoordinatesLat. (o)44.58751Long. (o)-79.6655Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012219Metagenome / Metatranscriptome282Y
F024556Metagenome / Metatranscriptome205Y
F031872Metagenome / Metatranscriptome181N
F033435Metagenome / Metatranscriptome177N

Sequences

Protein IDFamilyRBSSequence
Ga0157140_100001051F024556N/ALYGSKAVAAGVTAAVSAALGFLTMPFKGTDMNALKVGK*
Ga0157140_100001052F012219AGGTGGMNLRNFYIQKEPAPSTDWRVFGDIEDDDGNILGTFGPDGTSVNFWWVTQDETFQYQTVNQFAVMMAQQIISGDAE*
Ga0157140_100001056F031872AGGAGMVESLVVDEWIYDTLTADTTLQGLLAVDNRAPNYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDEQSLCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVDSTTPPFFLNRTSVSSSVDVSQDGRVDNGIVQLYTATITP*
Ga0157140_100001058F033435AGGAMSSIFDAIPKTEGRPNHSVDIERFIGAPGSFTFREPKAADLFPRPEVQKALKIAFPEFPDQMLQILMIMARCYVIQPGDGEINPSRRFAQLARDRSDIYLYVVGEFAKAFPIDIEAAVDEVPND*
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