Scaffold Ga0157140

Basic Information
Taxon OID	3300012348 Open in IMG/M
Scaffold ID	Ga0157140_10000096 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12639
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (11.11%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Coldwater, Ontario
Coordinates	Lat. (^o)	44.58751	Long. (^o)	-79.6655	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

219

Metagenome / Metatranscriptome

118

Metagenome

113

Metagenome

111

Protein ID	Family	RBS	Sequence
Ga0157140_1000009611	F085382	N/A	MSLYGSTFNSDYQSILADIGVPATVGGNLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPIASLAPGKKLTVNGQVLRVKGQSYKQASAVIELQCIDDNQ*
Ga0157140_1000009616	F076091	N/A	MLGIYVGVPEDVLLQYKQEALADLGKAVTSYSDSGTSVNKQFGMPPAQRLQEINYALSRIDPKKYGGAHTSVQINWDTRVDL*
Ga0157140_100000962	F021297	AGG	MSDTVTLSQGNTFACTFVWTPGTTGPANLLATTLTSTVEDKCGNLYDLTITKAGDGLSFTCTYPGSTADWALGLGRWDVKFVFPGGVISRTEVFRVQVIDSVTV*
Ga0157140_100000969	F082694	N/A	MGTKSARHIVEAAVAAHLSAQTELTGVNIYKGDSADTNVLPKAIVLCDSARLPNDFPDGLGNYSCSVRVTLLDSADDVTLTDHRARMAAIAGAMQDLEALQAVFTLQGDAHCYDITPLSEDEGVNERSWASVLVYEILVVVNPEG*

Protein ID

Family

RBS

Sequence

Ga0157140_1000009611

N/A

MSLYGSTFNSDYQSILADIGVPATVGGNLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPIASLAPGKKLTVNGQVLRVKGQSYKQASAVIELQCIDDNQ*

Ga0157140_1000009616

N/A

MLGIYVGVPEDVLLQYKQEALADLGKAVTSYSDSGTSVNKQFGMPPAQRLQEINYALSRIDPKKYGGAHTSVQINWDTRVDL*

Ga0157140_100000962

AGG

MSDTVTLSQGNTFACTFVWTPGTTGPANLLATTLTSTVEDKCGNLYDLTITKAGDGLSFTCTYPGSTADWALGLGRWDVKFVFPGGVISRTEVFRVQVIDSVTV*

Ga0157140_100000969

N/A

MGTKSARHIVEAAVAAHLSAQTELTGVNIYKGDSADTNVLPKAIVLCDSARLPNDFPDGLGNYSCSVRVTLLDSADDVTLTDHRARMAAIAGAMQDLEALQAVFTLQGDAHCYDITPLSEDEGVNERSWASVLVYEILVVVNPEG*

NMPFamsDB