Scaffold Ga0157140

Basic Information
Taxon OID	3300012348 Open in IMG/M
Scaffold ID	Ga0157140_10000024 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300012348 Open in IMG/M

Scaffold ID

Ga0157140_10000024 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Coldwater Creek, Ontario, Canada - S44

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	35585
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	39 (62.90%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

35585

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

39 (62.90%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location Name	Coldwater, Ontario
Coordinates	Lat. (^o)	44.58751	Long. (^o)	-79.6655	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Coldwater, Ontario

Coordinates

Lat. (^o)

44.58751

Long. (^o)

-79.6655

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F006502	Metagenome / Metatranscriptome	371	Y
F057002	Metagenome	137	Y
F079388	Metagenome	116	N
F085618	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157140_1000002426	F004362	N/A	MSQNNSFELRLQNWAWYVTYGVIGPQVETTCRSFEKNYIPELGNLYAEAEPHYEPDHIDGDLIEQAIKGLPLNLRQALKLRYVSHPYASINQLAHAARTTVHRLEQDLENAKKRLQHELDKKARSNHYKSLLKVQDQQID*
Ga0157140_1000002428	F006502	GAG	MKPEKTTIMIGLLGDKPKMGMKEEGGLLAEDKSSCPLSTIDADINKGNMKKAVLTADYGSKKDGEGKCKACEYFNTDMADCGVPKGKGHCDIFDFVCDQNNGCMAWEAMGEDEMEMEMEDEE*
Ga0157140_100000244	F079388	N/A	MEEKMINKHCLDAFNKLEQSAYHPQEYFALGWNAAIDAMSAEFAKKWEMNELSDVPFITQPINESLEDKE*
Ga0157140_1000002459	F057002	N/A	MITVQTGMQSLRKKFSQSLHNQYDPPAREAVTKWVKMKWGLDCRENPNVYGVDLLVHRAGKLVGYIEVEVRSWAYCHYPTIHCAQRKEKLFQQDLPVLFFALTHDLIHAYWAKAEVIEGCPLIEVKNFEVPAGELFFDVPVKHFKYVDLTQPF*
Ga0157140_100000247	F085618	AGG	MTYNNDNYYEPADDDYSLDLQERIYDAVKTDPEYDPSDIFNWGEALQQKCNDPDLQAFLRDCIEKKEWEKLGRKLYYLSFEYQEAIAEHFLTK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157140_10000024

Overview

Ecosystem & Geography

Associated Families

Sequences