Scaffold Ga0157142_1000271

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000271
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20175
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (84.62%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019820	Metagenome / Metatranscriptome	227	Y
F079806	Metagenome	115	Y
F095364	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_100027118	F019820	AGGA	MSDLKPVKISGELFWTKWMAEFNKAFNTDNDKYECTIGNISDDDAAKLTSLGIKVKHKDAMGNFIVAKSKYLFKPTDDNLKEVPIEALGNGSKCVAIVGSYTHRMSAKHGNAPSIKTVMVTEVKTYVPETSTADDDAL*
Ga0157142_100027119	F095364	N/A	MNSNKIKEQIILNMSDDSFVILHSESLDILDVYLVLSAALDYIEDEAEAVSRREGSYLQ*
Ga0157142_100027129	F079806	AGG	MSNKGKKLSGTATLSYDLSKPEQVFAYKCALKGLDACLMLESLKASTQGYQAYKGLSESVLADIIQDLSQWEDVKL*