Scaffold Ga0157142_1000257

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000257
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21175
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (74.42%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004362	Metagenome / Metatranscriptome	442	Y
F057002	Metagenome	137	Y
F063629	Metagenome	129	N
F079388	Metagenome	116	N
F087962	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_100025714	F004362	N/A	MDERLRNWAWYVSYGVVAPQPDNTCRSFEKNYIPELGNLYAESEPHYEPDHVDGDLIEQAIKGLPLELRRVLKMRYVSHPYASSGQLAHALRISPNRLEVDLQNAKKRLQHELDKKAKSNHYADLLKMQVSKND*
Ga0157142_100025731	F063629	AGGAG	MTAFEKLMAEFGSIKNLCEKIGVKYVTAYAWKMRNGIPKKWHKAITEASEGRLTENDLG*
Ga0157142_100025737	F079388	AGG	MINKHCLEAFNKLEQSAYHPQEYFALGWNAAIDAMSAEFAKKWEMDELSDVPFITQPINESMEDKE*
Ga0157142_100025741	F057002	GGA	LSLEQNAIQDLLVKCVGRYQETKTKKFNQQLHDKYDPPARKAVTDWMKMKWGLECIPNPNVYGVDLIALRGGNPVGFVEVEVRGWAYCHYPTIHLAQRKDKLFDQDLPVLFFALTQDLSHAYWCKAEIAKKFPLIEVKNFEVPNGEMFYDIPTKEFKYVDLTQPF*
Ga0157142_10002576	F087962	AGG	MNKDERAQTYLRDEFFTELYEAQVEFYKSSIFNSHQDDVEGRERALVKLRAIQEFYASIQSIADSSEIEKKRFRVF*