Scaffold Ga0157142_1000176

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000176
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28512
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012328	Metagenome / Metatranscriptome	281	Y
F015856	Metagenome / Metatranscriptome	251	Y
F026827	Metagenome / Metatranscriptome	196	Y
F030356	Metagenome	185	Y
F066604	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_100017611	F066604	AGGA	MEKKPTEKKKVTSKQVNTPGGGRGGARANSGRPKGSTEQVTIDGLLLALKDKSGGKPYEALLVEDFMGARARGDSQLTVKYHNLILNKVMNSLAKIEVTDSADAVEMKQQAFAEALAKMTGLKKD*
Ga0157142_100017614	F026827	AGGA	MSNPQSKPINQKRGPTTGNGGTGSKRQDFMAEKSKSSSEKAQLANMVTSALEMRGRGQFGGRTNPALEGLHSNTGPKRNPTASKK*
Ga0157142_100017615	F012328	N/A	MKKKTTKPTTENIWDAPAEDVLDSVTETFTEKVQEVIEQTKPKQPKSLNAIQFDLEGLMTDFPTAKELERFVFDETGIVLNLKGRANKLKYQVAMDVLNGEQVDSVFLGDNNPYIDKTEMVPVEELKAKPARDKTLPARSHMQNSFYCPMIPHPDDTMRAMDKKVHMVFRKYDNGMISYEIQGPLEQIPHGEKINKYGKVVPEIIKWVDPRTGEQVVMREDGTLTQQGKRLRALMQTKKVNKTNQWDVWIDREFLSVDNSVLNNVWDLGK*
Ga0157142_100017620	F030356	AGGA	MLDIKNIPVDDINQNRKINERFVRMKNLMDVKMASYLRYLGTKNAVNRASDYHYLCLAVTDSTAPVNGIDYIHPSVKPVVDYATAVIAKGLMPNGEINFEFVADGEDDEYAARQATDMVSKVVNQMNDPHFILERWIMDSAMHKNGMMMIKPVREKVTRYVETEGTLEQLKAFEAQAAEGGLTALRQSRRRVKVELEKVWKEMQGATKEFNQGLAQEMVGGFVDQLGTTNPDDMDGLMESNTDGLQTTQVDGEQQLLKDSIGRNSIYSAKYKLTGYGINIKFHPIAQHYWICDPTVPEMKDQPFCGYYDPMTIQEAMDLYPDINLEEFRMHAEYNMNGAYQAGSVLNNLAIHARDSVPVMGIPVSSASSADPDSKQVSVVTVWNKYDIDGDGELELVELIYSGSYIISAREVEFIPVANMCPKPLPGNFYGMSIAESVIPMQEYNTSAARAEIQLGLLTATPRLGVKPDRLDFEMLQDGEAAIFILDSKFDPSKDVYQVPPPSGNLQFLEVAMNRIQQDTMAMVGMTTPQDVFNPEVMAEGNSGVKLQLALSPNQIIQDNTVRNAAEGLREALWLVWRTLIQYGDDYGVKKLAQSVHPDKKPEFLDFLAWDDMNFCDRKQVHLELALGMNSEENALGRLQIIQKCQSDLYTATQSMVTSGTLTPEIYKKIKKPFADTLYVLGVKDCDSYLPSDEEVMAMIKQANESMKNKEPSPIEKKDLSQAMLNQVKANQINMEVAGQDAETQLDYMALAQGDPKVYS*
Ga0157142_100017621	F015856	AGG	MINENSIEFYNNRLTVDYTNLSKLSPQQKDRIRQYGSQAEQLLKNKDLAMFIHHFKFELADNLSGIRGFTADDNQQRVAVSHELGAIDSFVNSLKRAVYLKNKLGNTDIDAQV*