Basic Information | |
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Taxon OID | 3300012347 Open in IMG/M |
Scaffold ID | Ga0157142_1000052 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Fish Creek, Ontario, Canada - S48 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 59857 |
Total Scaffold Genes | 86 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (82.56%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Granton, Ontario | |||||||
Coordinates | Lat. (o) | 43.2206 | Long. (o) | -81.2368 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004260 | Metagenome / Metatranscriptome | 446 | Y |
F014846 | Metagenome / Metatranscriptome | 259 | Y |
F020865 | Metagenome / Metatranscriptome | 221 | Y |
F063624 | Metagenome | 129 | Y |
F082586 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157142_100005212 | F014846 | GGA | MSGMFLDPTGEPTYGIGICARCSRKFLLAKLKPDPNYPALMVCDEDRDEYDPYRLAPRRPDQIVLPFNRPDTPVNTNPAGLIQEAGNQFIITEDGDGYLEI* |
Ga0157142_100005222 | F004260 | GAG | VSIEAQLLNNLKVKQQEFALESLKRPQNRDTFEYGYRVGVVAGYEAAINVLLAILDEERNSDKDL* |
Ga0157142_100005223 | F020865 | AGGAG | MADKPTTGTVPMNNAAVKQHHRMAAGQPVTGQTTPSAPAEKKTPA* |
Ga0157142_10000523 | F082586 | GGA | MKEFWFWVAIVTLLIFCIMALSMIALHTNKQLKEVKALVVRLEEKEKKREKTRRDPIDPE |
Ga0157142_10000524 | F063624 | N/A | MLSEGKAEIGKFKKQVEGGVADAKAIFKEVTGLWAWVQNLCGVAPKKTAVPLDVQKPVQEAAKPKAKREPEPELSYEEFQARAVHEICENLKVYFEAMRHLKAHCRELDELALTTDKVADSAIDRIEIQWQMDQLSAQLKQSMIYGTPESLGLGSMYKEFLSKYDEILEEQEVARELKAKRERDNRWRQEHRKEILVAKLTYVVATAMGLLQMIGMYFTL* |
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