NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157142_1000052

Scaffold Ga0157142_1000052


Overview

Basic Information
Taxon OID3300012347 Open in IMG/M
Scaffold IDGa0157142_1000052 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Fish Creek, Ontario, Canada - S48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59857
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (82.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameGranton, Ontario
CoordinatesLat. (o)43.2206Long. (o)-81.2368Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004260Metagenome / Metatranscriptome446Y
F014846Metagenome / Metatranscriptome259Y
F020865Metagenome / Metatranscriptome221Y
F063624Metagenome129Y
F082586Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0157142_100005212F014846GGAMSGMFLDPTGEPTYGIGICARCSRKFLLAKLKPDPNYPALMVCDEDRDEYDPYRLAPRRPDQIVLPFNRPDTPVNTNPAGLIQEAGNQFIITEDGDGYLEI*
Ga0157142_100005222F004260GAGVSIEAQLLNNLKVKQQEFALESLKRPQNRDTFEYGYRVGVVAGYEAAINVLLAILDEERNSDKDL*
Ga0157142_100005223F020865AGGAGMADKPTTGTVPMNNAAVKQHHRMAAGQPVTGQTTPSAPAEKKTPA*
Ga0157142_10000523F082586GGAMKEFWFWVAIVTLLIFCIMALSMIALHTNKQLKEVKALVVRLEEKEKKREKTRRDPIDPE
Ga0157142_10000524F063624N/AMLSEGKAEIGKFKKQVEGGVADAKAIFKEVTGLWAWVQNLCGVAPKKTAVPLDVQKPVQEAAKPKAKREPEPELSYEEFQARAVHEICENLKVYFEAMRHLKAHCRELDELALTTDKVADSAIDRIEIQWQMDQLSAQLKQSMIYGTPESLGLGSMYKEFLSKYDEILEEQEVARELKAKRERDNRWRQEHRKEILVAKLTYVVATAMGLLQMIGMYFTL*
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