Scaffold Ga0157142_1000039

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000039
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72100
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 74 (77.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034151	Metagenome / Metatranscriptome	175	Y
F044442	Metagenome / Metatranscriptome	154	Y
F053790	Metagenome / Metatranscriptome	140	Y
F078236	Metagenome / Metatranscriptome	116	Y
F085212	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_100003911	F078236	GGAG	MSLKHIIKHTETEIVFKCYITSTGGGNVDLSLENDMTKSTQVYVAPTSVPVETDGHFAEYTGSRVYITGLWWGTKSGKQLDITRILDTTPDPDTVHGHYYLNGSGAYEWNTAGFSDRTYANKDIRLTFDGEGHCIVRLRKEGWNPKVETAQFSIYDNTDAVGS*
Ga0157142_100003932	F085212	N/A	MRVFQETTKDWAVDCPNHIYYLTDDKSKMVAFYNVNTGKTTKFKKPIGFDTRRRTFKELKRK*
Ga0157142_100003936	F034151	N/A	MNKARLTPNLLSFVTVRRGEWILKVSVFKNKQIMVIAMNCFDVENLMIRYFFSQHHAADFIEKLIEE*
Ga0157142_100003945	F053790	AGGA	MSERIYVCVVCGHQLSEADWLSLPDTVNCPECGVSKDDYVLME*
Ga0157142_100003953	F044442	AGGA	MLKFAALSLSQKRFVVAVLEAQPQYKKNPQITLKECASIYYEMRDQRTGAKGEKIGYPNWLFAKNKVERGVYQLPVPTAEELSAFAKEIAVKNATPVAKAKAKVAKLAKAKVVKVKAPAKKVAEAKETEMEISRLQRVIDESDSFDDDTEDFNAILRENGIEV*