Scaffold Ga0157142_1000001

Overview

Basic Information

• Taxon OID: 3300012347
• Scaffold ID: Ga0157142_1000001
• Source Dataset Name: Freshwater microbial communities from Fish Creek, Ontario, Canada - S48
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 288673
• Total Scaffold Genes: 426
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 107 (25.12%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Granton, Ontario
• Coordinates
  • Lat. (^o): 43.2206
  • Long. (^o): -81.2368

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005879	Metagenome / Metatranscriptome	387	Y
F023608	Metagenome / Metatranscriptome	209	Y
F024315	Metagenome	206	Y
F041197	Metagenome	160	Y
F082698	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157142_1000001106	F024315	N/A	MNYSELSKMSVEELRDINQMVVALIKSKRNMESLQNKIGLRVGMLVKVNHPKLQGRELEVTKINRTKANLRVVGGFASYNVPVSLIQY*
Ga0157142_100000118	F041197	N/A	MSITFGGEHLTIKGSTKATIKRSIEIVGTNSVLPIEIIGDFKDIPPHLHQMYIESMIASYGSVDVYDNTEPEPKTIEEQKSEWRWNRIVDIIGKAIR*
Ga0157142_1000001262	F005879	N/A	MSTFDGKIFWREDFDGESAQGGIFTRSVDLKKFMELVEANENQNGGEVIGLRFDENNLELIVKR*
Ga0157142_1000001355	F023608	GGA	MTNLTEEIGRICNLLEDAYEEQNWQIVKKMIEALDKIYNDLDRADNGFIDYED*
Ga0157142_1000001401	F082698	N/A	MSNNKMIELMTMIGETTSENFSPTLRAKLVKVNEKTGVCTMEVVESPYTSMKTMGSLNEDRIGEKYKAPVYRIWNAFFY*