Scaffold Ga0157141_1002631

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1002631
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3449
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F014261	Metagenome	264	Y
F071224	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_10026314	F000957	AGGAGG	MSSFRHLDGMVALLSEIYHINERIMTGDICSAKTAIESKRMEKLLNHYHEALSEDGASKISLQAYAAAGGWVGVTYSYTFDGFEVAGSQVPRRV*
Ga0157141_10026317	F071224	N/A	MAEYAARRLQAILPQIAALNAAGKSQADAAAALDTTVCTLRQWLDITGTTWVNLKKRGPYRRQK*
Ga0157141_10026318	F014261	N/A	MKSLIALTALIILGWTAVVTFCGPELYRAINGPEPVKAKAVRRHR*