Scaffold Ga0157141_1000689

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000689
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9221
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (8.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_10006891	F085382	N/A	MSLYGTFLADYQSLLADIGVPATVGGNLFLVGLSQPMNTPKFDAGGFTEEKMWTVRFAAATAPWTASDGRVGGQVATIASGVPIASLAPGKKLTVNGQVLRVKGQSYKQASAVIELSCIDDNQ*
Ga0157141_10006893	F082694	N/A	MGTKSARHIVEAAVAAHLSAQTELAGVNIYKGDSADTNVLPKAIVLCDSARTPNDLPDGLGNYACTVRVTLLDSADDVTLTDHRARVAAIAGAMQDLEALQAVFATQGDAYCYDCTVTSEDEGVNERSWASVLAYDILVVVNPEG*
Ga0157141_10006899	F021297	AGG	MSDTVTLSQGNTFACTFVWTPGTTGPANLLATTLTSTVEDKCGNLYDLTITKAGDGLSFTCTYPGSTADWALGLGRWDIKFVFPGPPEAVSRTEVFRIQVIDSVTA*