Scaffold Ga0157141_1000550

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000550
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10748
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F001176	Metagenome / Metatranscriptome	756	Y
F042904	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100055010	F042904	GGCGG	MDNKQTVLEGIIEDVATDLYNKWVAAMPEEDKNEIAFQALSKNAHETTLFVVQNFMNKFNDAAEALKGD*
Ga0157141_10005502	F000473	AGAAG	MFIDKSLDKQKEHFKYGINQWTGEPNKPVFYTDEMKKKVRELKQPMFLLMDIVMYPDFLAIRLYEDNFVQFDGIEKEKVIDYVSKVKHLLESYGVRCEMEGVPSERVV*
Ga0157141_100055020	F001176	GGA	MSENGTGMASPGNSEASGALTSREATAKSPSQGKFRSGFAGPKPAIKVDTNKHGIRREVNLNPPKKTSGKKK*
Ga0157141_10005504	F000671	GAGG	MDKILCYSCNKSKNKLSVKKSALLPINLFLCETCLTAKLEPRWVVILSGRQNGIDSVKDAILKRRYLGEEISAQELMI*