Scaffold Ga0157141_1000098

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000098
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37163
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (81.03%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F009393	Metagenome / Metatranscriptome	318	Y
F058801	Metagenome	134	Y
F067676	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100009837	F067676	AGGAG	MTKEQALAAIKLLSAMESWAFSQPAASLPDYLHEDLCKSMDVLEAIILEKKP*
Ga0157141_100009841	F058801	AGGAG	MKNYTTPRNYADCTWVQGYGRKEPLLKRLAPYALAFLIGVGMAALLVAWWSS*
Ga0157141_100009852	F000961	AGG	METADMAEIDPVKYGVLWERVQNYERRFDEMSSKMDKMEANVEKLVALANQGRGGFWAGMAFVSFVSSAIGFGFSWLKGH*
Ga0157141_100009853	F009393	AGG	MATGSQIPFNPQGKTVVIAATTTAPTGLQAPVDTKYTPQATGQYRIVNSGTVAVFLGFGSTAADAAANAVAPVAGTPSNALALLPGAIEVLRFTPNTFFSGLAASATSVYITPGEGL*