Scaffold Ga0157141_1000084

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000084
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39511
• Total Scaffold Genes: 73
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (32.88%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002909	Metagenome	521	Y
F031025	Metagenome / Metatranscriptome	183	N
F037638	Metagenome / Metatranscriptome	167	N
F058796	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100008423	F002909	N/A	VAEIDLSKLGDALDTFLGDGGNDDLLNQIIENWWNQKVYPEIARSMDSKGVNASSALKQSFVPGEIIKTPTSVNTILLAEDYWEFVEYGRKPTRNGHTEGTPYLWQSIKEWMSYKGIKPAQDQTYDSLAKAIARKIHRRGTKATHFLSDAFTESLQMELVNELNARLGDLIFAVEVKS*
Ga0157141_100008450	F037638	N/A	MTNIEFILSLQPLYDTWKKTQVFNPTPEQGAILNNVHREIFGRNLPNCSTCITEALHSLLIWANQQQEAITKAQLADDEQKPRRRRKNEQ*
Ga0157141_100008463	F031025	GAG	VALSITQQPNTYAPGYNDTNFVITESSGGIYTKDNFKFIAEVKQNTTSLAKLKAPIYFGSTNKGVFNIGRILENYVFYDWDYNDTLASGCVNSSMDYKVEFGYEYSASATGSVTEYTNLTSATGTVWNASLNPFDLVNYSGQYTMDGDGKFLTPIRTKTIHRSQKDWLYAIRNTATSAVITYSDASTQTLTLPTSKIVRVPIGSQLTIPGAATYFDVVLKNGGTTLSETYRVNIIDECSKYDTTDLFFLNSLGGFDSFRFNRVRRDTFDIARKQFSSNPYTLGASYGYETSSFKTKTYDTNMVHKVKLFSNWITEAQSQWLLDLVSSPVVYAYDGTLVAVNVDTTNYEIKKHVQDNAFLLELDITYSFDTKRQRR*
Ga0157141_100008467	F058796	GAG	VEWKIKLQHENTNSNFIQMNAKETLKELRAMLGFSEEETKVEMATAVLTDGSTIEWEGELAVGTAVFVQTAEGNIPAPDATHEVEGGMLVTTEGGFVTEIVEPEVEIEIEAEEFATVSAFNDVVYKLESAIAELSAKVESLTASNVKHKEAMSKAIDLIEKVADLPSEEPLKAPVSTKKNDRFEALKKYKNAINK*