Scaffold Ga0157141_1000036

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000036
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 66338
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (14.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019105	Metagenome	231	Y
F030696	Metagenome	184	Y
F070887	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100003662	F030696	N/A	MKKIALIIISMHLLLSCSLHYHLEKAMKKGYRCDDVSDTIKITSVDSVPVIVHDSIVWEKFFVTKDTIIKYKTSYIPKTRWQTRIEYKLKRDTIRQIQKIEVAKHKSQKKGNGNLGNLWLLFFIGFAVSTIIHYLFKFSKFNL*
Ga0157141_100003666	F070887	N/A	LSFSQSRYPLQTIIDGDSVVILTKAQADTINSIFENQKTKIANFKQEAKVKDSIISLRDTLLVYYAQRYTEYKTIIETQIVREDKFDTIRGWLINRAKEGSWIYYSYLNNEIVAVDLSDYVVRKDDYTGDIMFYKRTEDCPNDNKQKEPPVGWHYDVVKPKRPKLNIFKL*
Ga0157141_100003667	F019105	GAG	MKRKLLIVGSLFITLVVIQVFSSGHGHVVVVEDNIHLTGENKKLTTENKKLTNSVSKLEAEKEDLIEDKVSLENMVSEVIGDLDSTKSVVKDIKNELKNEKDIVRKQSSGKQFEFQPITLPTSDDN*