Scaffold Ga0157141_1000014

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000014
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 99355
• Total Scaffold Genes: 150
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 124 (82.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001061	Metagenome / Metatranscriptome	789	Y
F001629	Metagenome	660	Y
F002130	Metagenome / Metatranscriptome	591	Y
F018699	Metagenome	233	Y
F053096	Metagenome	141	Y
F054589	Metagenome / Metatranscriptome	139	Y
F086797	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100001413	F053096	AGGAG	MKRYTGPARGVPTRIEIVSDKAERVIFLLLALFMAVYLYLE*
Ga0157141_100001417	F054589	AGGAG	MKAMDLDYEMLWYAAKLMEQQGGGFAACIAQAFFRADAMNRERLLTAFDDLFVKFYRIHRLNEMRKEEME*
Ga0157141_10000145	F086797	AGCAG	MDLHLFEGEEMSEAYDDYCMQMAFVEKAIEEQEARRNFRTEVWTTKDGRRLAIKDMEDSHLFNAYKHSQSALLFREMVLRLFEERMKK*
Ga0157141_100001455	F002130	AGG	MSEKPASTIDKVLAYVDSPFKLFALLVMGIVAFVGYFLWQNQEFMRDAYRESKKLPEINTSRVDETSAMLFKKTGAATVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSGNNNDVIALMTNQIPCSEYRYAQSEVGLWYIEKGVGYTCRVSVPPDSHRFVGQITVGWPQQPESLEQVKFMLEIASAMLTKRGN*
Ga0157141_100001459	F001061	GGAG	MAELNATPPNLPLAPDQYERRYQDQLNNILRLFFNQLNNPGDVGAATLNLNLNTLPTDADEATLRLGDVFRDTTTGATATSQALRIKTAP*
Ga0157141_100001475	F018699	GAG	MATRDYKKEYKRDLETGKSGPDSDQHERQRARRAYDKKGIDRAGKDIDHVKPLRAGGKSTPGNLRLRSKKANQGDNK*
Ga0157141_100001491	F001629	AGGAG	MNLNQGALAQGLVDELLEVIHHYDTALYMSTVVGVLELVKQQLINESLEAAEDDD*