NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157141_1000014

Scaffold Ga0157141_1000014


Overview

Basic Information
Taxon OID3300012346 Open in IMG/M
Scaffold IDGa0157141_1000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Emily Creek, Ontario, Canada - S29
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)99355
Total Scaffold Genes150 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)124 (82.67%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lake, Ontario
CoordinatesLat. (o)44.46181Long. (o)-78.6228Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001061Metagenome / Metatranscriptome789Y
F001629Metagenome660Y
F002130Metagenome / Metatranscriptome591Y
F018699Metagenome233Y
F053096Metagenome141Y
F054589Metagenome / Metatranscriptome139Y
F086797Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0157141_100001413F053096AGGAGMKRYTGPARGVPTRIEIVSDKAERVIFLLLALFMAVYLYLE*
Ga0157141_100001417F054589AGGAGMKAMDLDYEMLWYAAKLMEQQGGGFAACIAQAFFRADAMNRERLLTAFDDLFVKFYRIHRLNEMRKEEME*
Ga0157141_10000145F086797AGCAGMDLHLFEGEEMSEAYDDYCMQMAFVEKAIEEQEARRNFRTEVWTTKDGRRLAIKDMEDSHLFNAYKHSQSALLFREMVLRLFEERMKK*
Ga0157141_100001455F002130AGGMSEKPASTIDKVLAYVDSPFKLFALLVMGIVAFVGYFLWQNQEFMRDAYRESKKLPEINTSRVDETSAMLFKKTGAATVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSGNNNDVIALMTNQIPCSEYRYAQSEVGLWYIEKGVGYTCRVSVPPDSHRFVGQITVGWPQQPESLEQVKFMLEIASAMLTKRGN*
Ga0157141_100001459F001061GGAGMAELNATPPNLPLAPDQYERRYQDQLNNILRLFFNQLNNPGDVGAATLNLNLNTLPTDADEATLRLGDVFRDTTTGATATSQALRIKTAP*
Ga0157141_100001475F018699GAGMATRDYKKEYKRDLETGKSGPDSDQHERQRARRAYDKKGIDRAGKDIDHVKPLRAGGKSTPGNLRLRSKKANQGDNK*
Ga0157141_100001491F001629AGGAGMNLNQGALAQGLVDELLEVIHHYDTALYMSTVVGVLELVKQQLINESLEAAEDDD*

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