Basic Information | |
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Taxon OID | 3300012346 Open in IMG/M |
Scaffold ID | Ga0157141_1000014 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Emily Creek, Ontario, Canada - S29 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 99355 |
Total Scaffold Genes | 150 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 124 (82.67%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Kawartha Lake, Ontario | |||||||
Coordinates | Lat. (o) | 44.46181 | Long. (o) | -78.6228 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001061 | Metagenome / Metatranscriptome | 789 | Y |
F001629 | Metagenome | 660 | Y |
F002130 | Metagenome / Metatranscriptome | 591 | Y |
F018699 | Metagenome | 233 | Y |
F053096 | Metagenome | 141 | Y |
F054589 | Metagenome / Metatranscriptome | 139 | Y |
F086797 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157141_100001413 | F053096 | AGGAG | MKRYTGPARGVPTRIEIVSDKAERVIFLLLALFMAVYLYLE* |
Ga0157141_100001417 | F054589 | AGGAG | MKAMDLDYEMLWYAAKLMEQQGGGFAACIAQAFFRADAMNRERLLTAFDDLFVKFYRIHRLNEMRKEEME* |
Ga0157141_10000145 | F086797 | AGCAG | MDLHLFEGEEMSEAYDDYCMQMAFVEKAIEEQEARRNFRTEVWTTKDGRRLAIKDMEDSHLFNAYKHSQSALLFREMVLRLFEERMKK* |
Ga0157141_100001455 | F002130 | AGG | MSEKPASTIDKVLAYVDSPFKLFALLVMGIVAFVGYFLWQNQEFMRDAYRESKKLPEINTSRVDETSAMLFKKTGAATVAVFKVNPLFNSRVLYKAYTKDGRDKSIEDIDVGLFSQNSGNNNDVIALMTNQIPCSEYRYAQSEVGLWYIEKGVGYTCRVSVPPDSHRFVGQITVGWPQQPESLEQVKFMLEIASAMLTKRGN* |
Ga0157141_100001459 | F001061 | GGAG | MAELNATPPNLPLAPDQYERRYQDQLNNILRLFFNQLNNPGDVGAATLNLNLNTLPTDADEATLRLGDVFRDTTTGATATSQALRIKTAP* |
Ga0157141_100001475 | F018699 | GAG | MATRDYKKEYKRDLETGKSGPDSDQHERQRARRAYDKKGIDRAGKDIDHVKPLRAGGKSTPGNLRLRSKKANQGDNK* |
Ga0157141_100001491 | F001629 | AGGAG | MNLNQGALAQGLVDELLEVIHHYDTALYMSTVVGVLELVKQQLINESLEAAEDDD* |
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