Scaffold Ga0157141_1000005

Overview

Basic Information

• Taxon OID: 3300012346
• Scaffold ID: Ga0157141_1000005
• Source Dataset Name: Freshwater microbial communities from Emily Creek, Ontario, Canada - S29
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 156904
• Total Scaffold Genes: 234
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (20.94%)
• Novel Protein Genes: 13
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (46.15%)
• Associated Families: 13

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lake, Ontario
• Coordinates
  • Lat. (^o): 44.46181
  • Long. (^o): -78.6228

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015952	Metagenome / Metatranscriptome	251	Y
F020696	Metagenome / Metatranscriptome	222	Y
F025504	Metagenome / Metatranscriptome	201	Y
F031091	Metagenome / Metatranscriptome	183	Y
F031500	Metagenome / Metatranscriptome	182	Y
F032541	Metagenome / Metatranscriptome	179	Y
F042902	Metagenome / Metatranscriptome	157	Y
F053885	Metagenome / Metatranscriptome	140	Y
F057131	Metagenome / Metatranscriptome	136	Y
F061656	Metagenome / Metatranscriptome	131	Y
F061834	Metagenome / Metatranscriptome	131	Y
F087193	Metagenome / Metatranscriptome	110	Y
F103257	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157141_100000510	F103257	N/A	MKAVQNIQQLNHTAQRAISIWSDSLCGDVVLGFTYNNEPKQGGTEV*
Ga0157141_1000005115	F057131	N/A	MRNKDLFVVKLERFESEVKKMGYHIHKNERDEAYTKVEELLEKIGDLRTLLNTESQD*
Ga0157141_1000005148	F053885	N/A	MEGKVKTPKELMADLDGNYIQVIKKNGKTYEKLFKDPQRAVRAVGVENIKYLREVLKEQVNAKYVDVDSLTGTPENEL*
Ga0157141_1000005151	F031091	GAG	MKKLVSVFKCEHTGIVTTYTYRTHSITSGIETAEFEYPKGYLEQFAKEQKRMDNLPKTKRLYLNPATGKEVSYARARALGLLK*
Ga0157141_1000005158	F061834	AGGA	MARDVIEKKLFIESIILLREIEDRRDFMEEEIGMDMSIYEEKFLQIIENLFKVHFNKEQFALIQYYIYQVPTLDNWDGKIDLSDGKDMVTVDFETPEQVWNVISSLKNIK*
Ga0157141_1000005159	F061656	AGTAG	MAKFCFYLKSNPAQEPVGVVEALSKEEAIKFFSLTKMLPMNDFLTIFEVKSYTYGAQEGIKENAKQLLKG*
Ga0157141_1000005160	F032541	N/A	MSLINEIKQILSEVTKVNFKGHKFVLKIDVNEDPNKKGVKVQFLPTTFTGMSKQQQDEIAMELQQKLNQGLTPLGLSVERDRELKDKTVLGFFIYIEYLNKIIINALNQASKQQ*
Ga0157141_100000520	F015952	N/A	MSKNSAKSTYTQLMEWIPTLGRTTVPKKEQSQSKFSKADHYKKQGAYGKAGN*
Ga0157141_1000005200	F042902	N/A	MTLKDLIDLAGDRELSKSYPKADGLYIWDYKLQFNQDLNLELVLIPSDSGKTGFKDKVSVEELVNYVLESTDPEAPAGQIFAELEIVDVEGITIARI*
Ga0157141_1000005201	F087193	GAG	MVGKATEFETLRVLHTLWKSKDIDTVQVINMLNENYDLALTVLTNGEITAQTPDGKIKYTIK*
Ga0157141_1000005210	F020696	N/A	MKKLETCHHCGEEKENCYHGFITMCIPVPEMEAKIDKWGRKDWWENLERTDLTEEEMEELDQICCYDQALNTVGRGIQCDDCGRKEAELYEKYYPENLES*
Ga0157141_100000565	F025504	AGG	MRLRNILNEEKTFTLYQGLVRIKHTEEITASEVADFVRAMPGVTRVSAVDSNEDIHVVVLRVKILTAKSGTQVFDKLQKDAFRLVPNIKKVEISQQSIESLG*
Ga0157141_100000590	F031500	GGAGG	MISIHKILKEVITPTQEYQELVNNIVDEGGEYLGEGDYGAVFLVGDRVKKVTTDSEELEDAQQIKGQKTKYFVYIYDVEVRNPKLGIITMDNLEPFTGSEQDVPIDDIMEEAEKLGIYPDLEGPGGSIKMDNIMQDKAGRIKVVDV*