Scaffold Ga0157139_1000138

Overview

Basic Information

• Taxon OID: 3300012345
• Scaffold ID: Ga0157139_1000138
• Source Dataset Name: Freshwater microbial communities from Burnt River, Ontario, Canada - S22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2675
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.74057
  • Long. (^o): -78.6591

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F077297	Metagenome / Metatranscriptome	117	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_10001382	F084221	N/A	MSNNQQQIAEGVTGTISSILLSVPAWMVDVEFALKIFCLLLSAAASIFTIYKMRKKK*
Ga0157139_10001383	F047677	N/A	MKWLKSIFSSESDASSKRVASILALLVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFTKKKSNDSTSQESN*
Ga0157139_10001384	F077297	N/A	MTQQAKNQIKGAAVIVVAVTICAIMQILYIALKDTKKALEGYERRAERATHVIDSLEATNVQRMLQIQELNQQLEHNKERYEANISAIDSLDRNGLRRAMHNLLAELTSERYPGQSND*