Scaffold Ga0157139_1000026

Overview

Basic Information

• Taxon OID: 3300012345
• Scaffold ID: Ga0157139_1000026
• Source Dataset Name: Freshwater microbial communities from Burnt River, Ontario, Canada - S22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6159
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (12.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.74057
  • Long. (^o): -78.6591

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023350	Metagenome / Metatranscriptome	210	N
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_100002612	F023350	N/A	VTLDQYIEGNYKKFKELAKNIARGEDYYEDLLHDSLLSMFGSKHIENLIETGDFEFYLIRVMYLAVNSPTSPFYRQTIAWNRNRRDFKEYAHEVDKTWLGARMTNEQLDILISRLSEFERLIFQEYIFEGFTYRELSKQTGIPMPFLYRTIDNIKQKIRANVIRKK*
Ga0157139_10000262	F049635	N/A	MNKAIYKTPFGRLVKSNFKTMQNFKNVLRISDPTARLYVAHPERMRIKDFNNICLHTGLSREEVFSTFTPTKLINEEND*
Ga0157139_10000265	F045753	N/A	MYCPKITYCFIGDDIRTLNERIKTIAKDYQDEDNGGWFSVDETNHLVFIDEQDNLYVIHLRGRFWRKGERDFNLEYVTLEKDGISFSFDVDIFDDQI*
Ga0157139_10000269	F041777	N/A	MKKTLLFIALLFGAMLIAGTIDESTRQLEQQPNTTK*