NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157139_1000014

Scaffold Ga0157139_1000014


Overview

Basic Information
Taxon OID3300012345 Open in IMG/M
Scaffold IDGa0157139_1000014 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Burnt River, Ontario, Canada - S22
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10197
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location
Location NameKawartha Lakes, Ontario
CoordinatesLat. (o)44.74057Long. (o)-78.6591Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012871Metagenome / Metatranscriptome276N
F019140Metagenome / Metatranscriptome231N
F021113Metagenome / Metatranscriptome220Y
F027518Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0157139_100001410F027518N/AMNTENEIQLIHEELQEMNKKIDRIYHVLIGDDEMKIEGLVSKVQKHDKYIQNQRLQVARLGGIATAAGVVGGLIVQLILKLI*
Ga0157139_10000142F012871AGGMYGIALPEAQLLQMLHEFIVKHFRWVTFEHFNLAFELNAANELSKKTEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAESKEQESKQLKEKEMAVNDDSWRRMLAEDIHNYKKGKYTVIEIRAVSLIRWLEESKQITADTFTDDEYKLCKAKARKTIYFEQNLNKPMVERMSDRKRQLLKESIHFEGMRELYKLYLSKQ*
Ga0157139_10000146F019140N/AMKPTPLYESLKMTYEREREIVNSLANYFQQGKILGDILLELSQRKDLNAKEKIYLALMIGSMMTKNNEDGREQN*
Ga0157139_10000147F021113N/AMDKREYQPDALVVVIATSVFWVLVCLAFWNFNPKIETQVQIQKQDSIIYYNSGEYDRLLEEEINLYGTYRRYEDAQLSAKATYKRTRDTIIVRDTITRVDVITLVNSCDSVIEADSLVIDNLKEQINIKDEKTNNLEEVVAAYEQKTVLLSEQINTLNVENKKLDKQKKRRNRALVVSSSVAVLSTFVLSILL*
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