Scaffold Ga0157139_1000004

Overview

Basic Information

• Taxon OID: 3300012345
• Scaffold ID: Ga0157139_1000004
• Source Dataset Name: Freshwater microbial communities from Burnt River, Ontario, Canada - S22
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33593
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (73.08%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Kawartha Lakes, Ontario
• Coordinates
  • Lat. (^o): 44.74057
  • Long. (^o): -78.6591

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002986	Metagenome / Metatranscriptome	515	Y
F015592	Metagenome / Metatranscriptome	253	Y
F029429	Metagenome / Metatranscriptome	188	Y
F063699	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157139_100000434	F029429	AGG	MTPEKLKLARLYMGYSITEMADALRLSPDNGATSIRKMESGKVRISGPIMVAIDAMLKGYDPFDYDEDEDNEY*
Ga0157139_100000443	F063699	N/A	MDYTAHAIAELYAVARHHNIKAYEIANEAGITRVTLSNWKNKRSEPMLGAYLAAFHALERLIEAKAAN*
Ga0157139_10000046	F015592	N/A	MKFLTLLLGVLDKLLGAWAESRWKQQGSQETIKEANDAINRQIELGEAAIIVPDPERTERLRNRFDRSRK*
Ga0157139_10000049	F002986	GAG	MNTIDATQAQLNTHEEVCAFRYESICARMKRIESLGITACGTIIMLLIGILLSVLKTGV*