Scaffold Ga0157137_101696

Overview

Basic Information

• Taxon OID: 3300012286
• Scaffold ID: Ga0157137_101696
• Source Dataset Name: Freshwater microbial communities from Ausable River, Ontario, Canada - S47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1813
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ailsa Craig, Ontario
• Coordinates
  • Lat. (^o): 43.22713
  • Long. (^o): -81.5225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005320	Metagenome / Metatranscriptome	405	Y
F074881	Metagenome / Metatranscriptome	119	Y
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157137_1016961	F005320	AGGA	MSIDSMKPVKVAGELYWSNWMKEYNKKFNEANDKYECTLGQLSDAACAKLEELGIKLKDKDTMGKYIVGKSKFLFEPVDEEGNPVDIAKIGNGTKCYALVSSYRHKMSAKFGAAPSIKKLVITELKVYS
Ga0157137_1016962	F074881	GAGG	MVFNIEPNEAAFIVRVIGQLPTESGAFPLHQKLVAQFQEQDKQEVASTETAE*
Ga0157137_1016963	F088893	AGG	LKHIEKNEILFNVEGETFKIKIGEDLDLEEVYTVLASALVYLEDLALGIMAHPQSNELH*