Scaffold Ga0157137_100422

Overview

Basic Information

• Taxon OID: 3300012286
• Scaffold ID: Ga0157137_100422
• Source Dataset Name: Freshwater microbial communities from Ausable River, Ontario, Canada - S47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3997
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ailsa Craig, Ontario
• Coordinates
  • Lat. (^o): 43.22713
  • Long. (^o): -81.5225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015600	Metagenome / Metatranscriptome	253	Y
F090399	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157137_1004223	F015600	AGGAG	MDHQPDYNVPQHLQRMIDAGVSGLDILHGELKNLMLIAEQELTEIATEEEEGDYSDAMLSMDRTRAEGVLDTLVSLYTLTYQLSFAIAERESK*
Ga0157137_1004224	F090399	AGG	MNELIEYIRIHLISLHQDLEKIDYVNEHHFYRLKQAEIETSRHILSVAQDILNK*