Scaffold Ga0157137_100013

Overview

Basic Information

• Taxon OID: 3300012286
• Scaffold ID: Ga0157137_100013
• Source Dataset Name: Freshwater microbial communities from Ausable River, Ontario, Canada - S47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12158
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ailsa Craig, Ontario
• Coordinates
  • Lat. (^o): 43.22713
  • Long. (^o): -81.5225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011920	Metagenome	285	Y
F029371	Metagenome / Metatranscriptome	188	Y
F088546	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157137_10001319	F088546	N/A	MKIKDEYKGKTIVTYDSVLGQRKIEVDKIDTTRFAYYASIGLSHIFEKPTIAYTGIDHETAQADAVQDGEARTEQPTETRKKPATKTRKRKVNVTTN*
Ga0157137_1000133	F011920	N/A	MDLDLKILWAKNTIWVVRERIKNVREKLEKDKPDAKDYINGGKESEEQLLKTELVLIEMQNEIISLNRELNQLAKRNAQLRVAYDELKNELKFKNIEL*
Ga0157137_1000134	F029371	N/A	MTTEQKLVALCAFLPVLGDFIEDLNNNSVFRQGLKNKANLLLKEIEAVDRSVLRIDGEAKHKIYEQQINLQIAFRQWIEKEIIV*