Scaffold Ga0157137_100004

Overview

Basic Information

• Taxon OID: 3300012286
• Scaffold ID: Ga0157137_100004
• Source Dataset Name: Freshwater microbial communities from Ausable River, Ontario, Canada - S47
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29041
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (68.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Freshwater Microbial Communities From Rivers And Streams Along An Organic Matter Gradient Associated With Agriculture In Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ailsa Craig, Ontario
• Coordinates
  • Lat. (^o): 43.22713
  • Long. (^o): -81.5225

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011386	Metagenome / Metatranscriptome	291	Y
F029107	Metagenome / Metatranscriptome	189	Y
F045756	Metagenome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157137_10000426	F029107	N/A	MTQHALTTLSNNSSTLLTPYNIHSGMDITIQNVDTAAYVYVGGQGVSATNYGYRISPNNAISFELGANDSLYAVSDTNGSKIAIIKLNLESGA*
Ga0157137_10000431	F011386	AGGAG	MQITLTSMQGNTRKINLASKQEVYDFIDLFKSTLHANQRVKITCDLLGIDGYLQGAS*
Ga0157137_10000438	F045756	AGG	MTKYNVLISYVVEAEDEMRAIFALNKTLYPLSENEIAKFDPFLVEEVANA*