NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157136_1000227

Scaffold Ga0157136_1000227


Overview

Basic Information
Taxon OID3300012282 Open in IMG/M
Scaffold IDGa0157136_1000227 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4471
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.097417Long. (o)-82.141111Alt. (m)Depth (m)20.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000980Metagenome / Metatranscriptome814Y
F005177Metagenome / Metatranscriptome409Y
F047650Metagenome / Metatranscriptome149Y
F068816Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0157136_100022710F068816AGGAMPNWVYNTLTIQGPKSEIDFIKDKLNQPFKVLHDSWNMKTNAMEVSESVYSAPVFAFWNIHSPLEDGITMEEYVQQPSRLGISTDSPDWFAKEIEHAKTQKDWYNWNTSKWGTKWDVAVSDGDEYPDTELLEYKSE
Ga0157136_10002272F005177AGGAMKNRYRVEIYDENKANDLTIYSEQGVDKEYLTELVFSNLRKFDGDIRAYVYDNLKKKKTTALILNRESLPLKSELTKLLG*
Ga0157136_10002275F000980N/AMTKYQKYTWICTSDCDALIEYTFKDGYGWPNGVTDLTCRCGTSCTLLSVEDATIPYTDTPLPKEERMETETPAVTVPDTYNPNLLVTYKVIRGYSDAEYATDKVSSIEWDLHNSRTNSKTVQVLNSKIDTVKDIITEAYADSDDQETLRAIAEALDIELTRTVEWSASIEVSGTIELDLLAGYDTDIESEITDALFADSNNGNIEVTDQEVCNVSEC*
Ga0157136_10002278F047650GGAMTSEDLNLIYYCDACSVARASHLIKLLDGELAFCGHHYNKYKEALDKKAYEVIELNKTEESIPILEKAE*
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Institute for Fundamental Biomedical Research
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