Scaffold Ga0157136_1000094

Overview

Basic Information

• Taxon OID: 3300012282
• Scaffold ID: Ga0157136_1000094
• Source Dataset Name: Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6171
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (7.69%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.097417
  • Long. (^o): -82.141111
  • Depth (m): 20.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F003659	Metagenome / Metatranscriptome	474	Y
F006697	Metagenome / Metatranscriptome	366	Y
F011474	Metagenome / Metatranscriptome	290	N
F019128	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157136_10000941	F019128	N/A	LGGAAAALLTNTVGKQLGAGFAPYAGLVGSLATSLFLKQPEIAAGMAGYSGAKIGQALLGSDSAIGSLLAEDNSFNVSPSMYLQGEMAGEGIYASNYTLSGYDIPGL*
Ga0157136_100009411	F003659	N/A	MPQTAADAIGRYLIAREDVPVYDLPNGTRIGTINKGNSTAEVYSYVQRPGQVWFMFDYTIPGQTPGAYYVLAKDGRFSLSSAPGNVIVTPSSLPGVDVFPQGSQLKTFALYGIIGVLALLLLKK*
Ga0157136_10000942	F002259	N/A	MGMSAQDKMLNVASRLGLTTLKDMQGTTRMVYDSQTTAALTHTFFKGASQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPSGADGIAYTGISNTNRSVLFDLVIGNKTVLKDVSCEVGGEQAFYNDGTVGSSVIDLEGVGILIPPQVEYYVVAKPFDGPTRTALSLRLGCYLFGTGALLNFNTTI*
Ga0157136_10000943	F006697	N/A	MANQVQKLSYVDSKLGVSLPGQQTTRVIYDSVNAVAGQQFFQFFTNFAGKNEFQSNLTTNKLDSAESMVIKSVQIIMNTATSNLTDHLNLNITVGNQVVVKDFDPSFNCTSRGLSFDRLHSGFNSEINLEVRLLTEIVIPPQVNFKAELQLGNALIAAGDDITIILKGYGRIFSAGNSF*
Ga0157136_10000944	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIIFSSSTSAAPATLVNALQLRVTLTINNDTVIDDVVAHELGASVASGITTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0157136_10000947	F011474	GGA	MKEKIDHLTHFDIVVKEELNSCTSAEDMLMVLARNYDLRKPLGGITKAAFTIGLRTAVGMLRPEVSANFNYKAKEIKDTRFPHLKIFK*