Scaffold Ga0157136

Basic Information
Taxon OID	3300012282 Open in IMG/M
Scaffold ID	Ga0157136_1000072 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Molecular Research LP (MR DNA)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Molecular Research LP (MR DNA)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7095
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (12.50%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

7095

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (12.50%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location Name	Ontario, Canada
Coordinates	Lat. (^o)	42.097417	Long. (^o)	-82.141111	Alt. (m)	Depth (m)	20.5
Location on Map

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Source Dataset Sampling Location

Location Name

Ontario, Canada

Coordinates

Lat. (^o)

42.097417

Long. (^o)

-82.141111

Alt. (m)

Depth (m)

20.5

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F003659	Metagenome / Metatranscriptome	474	Y
F008615	Metagenome / Metatranscriptome	330	N
F030991	Metagenome / Metatranscriptome	183	N
F051646	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0157136_100007211	F003659	N/A	MTAADVLGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGSIKKYAIFGALGLLALLILKK*
Ga0157136_100007216	F008615	N/A	MNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFASWI
Ga0157136_10000724	F000710	N/A	MANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIILSQTTSAAPSILVNGLQLRITLTINNDVVIDDVVAHELGASVAAGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0157136_10000725	F051646	N/A	MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYVVIFGYDFSPAGGGFIAKSVTGFPSPVDYALDDAFIRFFETQQISFYTGTDFYPFIHHCPIKLAAAPFVTIGDITEDFISFQEIDNTPIARQVYITSVNDVTITHGLILNAIPATTGTIPVTNRTPGFLTYGGSAQLIQAQTNYGPVVTPLQFMQPSPKDFQDFALGLLPGNPDNQAFATPDATNGLLEANVHLLSFDPTFPEAAATNYYLCMHYAIYSKPIPEQRP*
Ga0157136_10000729	F030991	N/A	MVLKYLGCDQKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKDIVLKIYNRTYGVKT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0157136_1000072

Overview

Ecosystem & Geography

Associated Families

Sequences