Basic Information | |
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Taxon OID | 3300012282 Open in IMG/M |
Scaffold ID | Ga0157136_1000072 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Molecular Research LP (MR DNA) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7095 |
Total Scaffold Genes | 16 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (12.50%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Ontario, Canada | |||||||
Coordinates | Lat. (o) | 42.097417 | Long. (o) | -82.141111 | Alt. (m) | Depth (m) | 20.5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000710 | Metagenome / Metatranscriptome | 925 | Y |
F003659 | Metagenome / Metatranscriptome | 474 | Y |
F008615 | Metagenome / Metatranscriptome | 330 | N |
F030991 | Metagenome / Metatranscriptome | 183 | N |
F051646 | Metagenome | 143 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0157136_100007211 | F003659 | N/A | MTAADVLGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGSIKKYAIFGALGLLALLILKK* |
Ga0157136_100007216 | F008615 | N/A | MNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFASWI |
Ga0157136_10000724 | F000710 | N/A | MANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIILSQTTSAAPSILVNGLQLRITLTINNDVVIDDVVAHELGASVAAGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI* |
Ga0157136_10000725 | F051646 | N/A | MSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYVVIFGYDFSPAGGGFIAKSVTGFPSPVDYALDDAFIRFFETQQISFYTGTDFYPFIHHCPIKLAAAPFVTIGDITEDFISFQEIDNTPIARQVYITSVNDVTITHGLILNAIPATTGTIPVTNRTPGFLTYGGSAQLIQAQTNYGPVVTPLQFMQPSPKDFQDFALGLLPGNPDNQAFATPDATNGLLEANVHLLSFDPTFPEAAATNYYLCMHYAIYSKPIPEQRP* |
Ga0157136_10000729 | F030991 | N/A | MVLKYLGCDQKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKDIVLKIYNRTYGVKT* |
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