NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0157136_1000072

Scaffold Ga0157136_1000072


Overview

Basic Information
Taxon OID3300012282 Open in IMG/M
Scaffold IDGa0157136_1000072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMolecular Research LP (MR DNA)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7095
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location
Location NameOntario, Canada
CoordinatesLat. (o)42.097417Long. (o)-82.141111Alt. (m)Depth (m)20.5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000710Metagenome / Metatranscriptome925Y
F003659Metagenome / Metatranscriptome474Y
F008615Metagenome / Metatranscriptome330N
F030991Metagenome / Metatranscriptome183N
F051646Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0157136_100007211F003659N/AMTAADVLGRYLIAKKDVPVYDAPFGTRIGTIKKGNSTPEVYSYLVRQGQVFWVFDYTIPGQTPGAYYALQSPDAFSLSSVPGNVAIAPNVLPSVDVFPAGSIKKYAIFGALGLLALLILKK*
Ga0157136_100007216F008615N/AMNTINTFGAKMFGRFIRKGWHISFTDSYQDRVCVIPPERLDAKHLFGIYIPVLRHTWQPDLKREWWAALQDKNTMHGPTFEASAHPDDIERFAAFASWI
Ga0157136_10000724F000710N/AMANGINMISYRQGIRNKGFQITVPTTGATQTLSLSGLAKAFEGIILSQTTSAAPSILVNGLQLRITLTINNDVVIDDVVAHELGASVAAGVTTGFPAFIPFPRALTGQDTILLRVTNSSGASQLLNATVYYKNEI*
Ga0157136_10000725F051646N/AMSWQIPTQIEQDIIAGKAKYQTFQTGNGGQSILQVPPNSYVVIFGYDFSPAGGGFIAKSVTGFPSPVDYALDDAFIRFFETQQISFYTGTDFYPFIHHCPIKLAAAPFVTIGDITEDFISFQEIDNTPIARQVYITSVNDVTITHGLILNAIPATTGTIPVTNRTPGFLTYGGSAQLIQAQTNYGPVVTPLQFMQPSPKDFQDFALGLLPGNPDNQAFATPDATNGLLEANVHLLSFDPTFPEAAATNYYLCMHYAIYSKPIPEQRP*
Ga0157136_10000729F030991N/AMVLKYLGCDQKYFRYELYDGERMELYVETKLSARATAKLLFCNFGIKDIVLKIYNRTYGVKT*

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