Scaffold Ga0157136_1000018

Overview

Basic Information

• Taxon OID: 3300012282
• Scaffold ID: Ga0157136_1000018
• Source Dataset Name: Freshwater microbial communities from Central Basin Methane Hotpot in Lake Erie, Ontario, Canada - Station 1365 - Bottom - Depth 20.5m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Molecular Research LP (MR DNA)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11823
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Central Basin Lake Erie, Ontario, Canada

Source Dataset Sampling Location

• Location Name: Ontario, Canada
• Coordinates
  • Lat. (^o): 42.097417
  • Long. (^o): -82.141111
  • Depth (m): 20.5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044903	Metagenome / Metatranscriptome	153	N
F060719	Metagenome	132	N
F075869	Metagenome	118	N
F083690	Metagenome / Metatranscriptome	112	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0157136_10000181	F060719	N/A	MKPQHLKINIQDQVASDKLKLAYNKQASDRARYEAENSVSKSTGQAFQKYYVETKVFYTTANIGSECNEITFINNGTTNLNVADVPLGPNQSLRISGNRGEIDTTQYTLTFATPINTGNQLIVIRKLYI*
Ga0157136_100001811	F075869	N/A	MVVIFEYFSVILVYYLKFLKMKKWLLIGLAGLTGWYLLGKSQLANRTKLIFKKLGFSNKKFQLVFGVQNPTGSTAKISAITGEVYLGEKLIADFSSFGEQKIAPRSESELKIQASPSIGILQLITSKNWLKKGLQYTIKGTGNFDGIVVPFDYKSSLI*
Ga0157136_100001814	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEITALNILTAQLRKNKIEDLSPEDITYIIGESYNIAEEFCAFIEKGQKESGSIIL*
Ga0157136_10000183	F083690	N/A	MPEITADKIIGKTLFAKKDLIRLNSALKKIGTIVKGSPVGQVYSYIQREGKVYWQFIDFNNKPYFVVHTPDSFKFSGDVKQAVEQQKKEVEKVEKQEKGSIPFYIEKYGKWVLIYGVGAYLVATYIKSRK*
Ga0157136_10000187	F044903	N/A	MARRKKRSAPSRRRKSRKMGAIGKSFLMDAAGLVAGAAAARVLTSSGKILPNIDAKLKSAGVIALGAFFPKLLKGSLGQSIGSGMVAAGGLGLLQSTGVLGAIDDAMQIPVSVMAGDDLSVIAGYGEDNLSVIAGMDEEYAY*