Scaffold Ga0126329_10037989

Overview

Basic Information

• Taxon OID: 3300012273
• Scaffold ID: Ga0126329_10037989
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Oahu, Hawaii - Inanidrilus sp. 2 OAHU.JWI-85 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2466
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Hawaii, USA
• Coordinates
  • Lat. (^o): 21.3935
  • Long. (^o): -157.7156
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016761	Metagenome	244	Y
F032113	Metagenome	180	Y
F038501	Metagenome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0126329_100379891	F032113	N/A	VWRSAVQKFSSGGSGFDPSFSKTEKVRVVGVDQIRQCSRMKRLQNAADVESAHSEVCWATIQFNVTRKNEKGEEKRTAETECTLASKQQKDCRLGRNAVGVVAAIGKR*
Ga0126329_100379892	F016761	N/A	MCREVDMLTKIERREKRQKLRGESVCRITEMNVKVTGDDKFTGSGCSKGQKGTEVIEENREWFGINGRRWRTIDTED*
Ga0126329_100379894	F038501	GAGG	VKTEKLGVVAGGEGECGDDVAGWLVRERRSLDILPVKKEAKLSASKVPGEVVGSGEDLRCRSLLTVCQRRLGLLEAEDTRLE*