Scaffold Ga0136555_1019977

Overview

Basic Information

• Taxon OID: 3300012271
• Scaffold ID: Ga0136555_1019977
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1525
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008667	Metagenome	330	N
F034413	Metagenome	175	Y
F034773	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136555_10199771	F034773	GGAG	VSSKNLGDRLMHAKRETKSLKAQLQASRIAYDDLLAAFDKSVYTP
Ga0136555_10199773	F008667	GGAGG	VTPGSADFRRANRNPSYQCLPRAEYVQRAVEMAPRGSQLAKKLTAMDVTIIRDNRYGLTDKQQADTFGVSASMVYKIRKGERWGVVR*
Ga0136555_10199775	F034413	GGA	MSRVMNGTADYNFLPAALQSAIRLPIYYRACAVLAEPTKEDRRAKLDAEPESVRGLIEKEAFRLHKLRPKGLQ*