NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0136604_1040966

Scaffold Ga0136604_1040966


Overview

Basic Information
Taxon OID3300012270 Open in IMG/M
Scaffold IDGa0136604_1040966 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla E10 #628
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1084
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Rauer Islands
CoordinatesLat. (o)-68.5558Long. (o)78.1913Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001408Metagenome702Y
F014094Metagenome265Y
F102224Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0136604_10409661F102224N/AMSIFSENLGIIITAITGAIGGIAAFFGGKKSRESNANLEIGKAYELMAKQNNA
Ga0136604_10409662F001408N/AMKNYLKRTRHHLHAIVGITGGFLACLALSWVWLGFRNLEALDKAILFIAPAFVIGYAWERYQGIINKWDIFVSGISICLGVFLCGLLF*
Ga0136604_10409663F014094N/AMEVLKANTAQYEALNGFSNGNSRIKFVKDADDNYIIGKEVLTDDKFLEIRNQLKQLEVINYNPKNTEL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.