NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136606_1015683

Scaffold Ga0136606_1015683


Overview

Basic Information
Taxon OID3300012262 Open in IMG/M
Scaffold IDGa0136606_1015683 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome #680
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)833
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Vibrio phage 1.100.O._10N.261.45.C3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5602Long. (o)78.1968Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037512Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0136606_10156831F037512N/AGRYALQGAHNMQDYRIIMLSTDPESAVQFVIYTRAATEREAVDVANQQYGPHFEADRFAVTEIVN*

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