NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136606_1009777

Scaffold Ga0136606_1009777


Overview

Basic Information
Taxon OID3300012262 Open in IMG/M
Scaffold IDGa0136606_1009777 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Deep Lake, Antarctica - Metagenome #680
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1271
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Deep Lake
CoordinatesLat. (o)-68.5602Long. (o)78.1968Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029953Metagenome186Y
F104017Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0136606_10097773F029953GAGGMTLKQHMKAEGMPQKVVERDLTELLRKYDSECQLMTANRLNRLRGGSVPTPDETRALLEWSENTIESFRDGD*
Ga0136606_10097774F104017GGAGMKSPTLTQIRKSVEASGREYRKLKMYLNGQDAYEVNSVTMTKAEMIERFQMGAL*

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