NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0136563_125253

Scaffold Ga0136563_125253


Overview

Basic Information
Taxon OID3300012261 Open in IMG/M
Scaffold IDGa0136563_125253 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Club lake, Antarctica - Metagenome #315
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)579
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Club lake
CoordinatesLat. (o)-68.5417Long. (o)78.2467Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015820Metagenome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0136563_1252531F015820N/AMRNTIIQRHNTASVLIVQALQKGPCGANQIAYIDVGSADKLSEQGLDLRNIANKTRPSWLLPKLSAHALKASSCPDAILFLPSTVCSSRVTTRNPNFQQLAKDKKLNPNQWEIYLIDFKFCEDTRPDPQLQKAKAQHSVLIANLNRINPCWSYEDYLQILYRQTFDR

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