Scaffold Ga0137465_1000782

Overview

Basic Information

• Taxon OID: 3300012231
• Scaffold ID: Ga0137465_1000782
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT828_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10686
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9778
  • Long. (^o): -107.0022
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054114	Metagenome	140	Y
F062895	Metagenome / Metatranscriptome	130	Y
F098309	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137465_100078211	F098309	AGGAG	MPAWAGGWDGTFGEPHRLTNQATSHMRNVARSNASYGGQHFGEIGRALANGVGANAEYTIAQVQARQHNHMDMGGKIPIVPYAVVPLHATTIAEKEAFQAQMTPYFAPMPLAATPNVATSGYPVDKSGNSGGGFLGTVNK*
Ga0137465_10007822	F054114	GGAG	MASEPTPVVSFENKQTQQSFSMEQKQKAIPAYTVEPMKRRTVVNRTVKDEIGFRVVPTEIEVEGYMVRTLRGDSAFLTQGDLERLRLDRNLVPLYMEGGDDTPVGMQQQSAALSNKQKQTLDVLTQLLERDPQLLDKMLLASKEQDVFKQEDK*
Ga0137465_10007829	F062895	AGAAGG	MPDLPLANGLVIDTSTGQAMLPSTSPDAVIEQQTKASRQSEKTATIRGRDRNNRAVRRGLIDLPADSKAITTAGVVWLYFTLGINDAEIAEATGLKLSQVDMIKGLQLFTQLDQLLKDNLADMQADSVQKRIDAMSGKALDLLEDLTTDEETRPATKARIAMNMLDRGGFSPKQVMEHRHSLEGGLVIRHIREIAQPKHMPTVDVDAKDITSQIVQEGQ*