Scaffold Ga0137447_1025516

Overview

Basic Information

• Taxon OID: 3300012226
• Scaffold ID: Ga0137447_1025516
• Source Dataset Name: Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 944
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium SG8_40 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9779
  • Long. (^o): -107.0024
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066481	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0137447_10255162	F066481	GAGG	MNPGNTPGLRPRSATLRRAGRQVAAAVVFCALFASPALAEQGMVIWKNHECGFVILQMKSGYGIFEWVDGPQPNDGDVLEGDFRSAGERLVANKTADLPTTILLNAFALSRGAIAARMPAKCKKLPGYIPFEGR*