Scaffold Ga0150985_121693497

Overview

Basic Information

• Taxon OID: 3300012212
• Scaffold ID: Ga0150985_121693497
• Source Dataset Name: Combined assembly of Hopland grassland soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 983
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078456	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1216934972	F078456	N/A	GRKHATANYGFLYTAKGTASVFVPIGSALAAGKAFDFRADVLLLVGGALAFFAQFLAPTILRTPLKKKTHDALFTVGLAIVAYGIVLTVVPGIWTPFDAKFTMPRLGWAGVFSIAIVFDLAAAFLAFFVLRRMKVPSATEIHTEVAPTHGVVPAMKG*