Scaffold Ga0150985_111962272

Overview

Basic Information

• Taxon OID: 3300012212
• Scaffold ID: Ga0150985_111962272
• Source Dataset Name: Combined assembly of Hopland grassland soil
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1708
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Source Dataset Sampling Location

• Location Name: Hopland, California, USA
• Coordinates
  • Lat. (^o): 38.972988
  • Long. (^o): -123.116539

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021762	Metagenome / Metatranscriptome	217	Y
F099383	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0150985_1119622721	F021762	AGGAG	MYEKPVVKRFGSLRELTAGMGPNLGGDAQSVYHRS*
Ga0150985_1119622722	F099383	GGAG	MIDRAHQDVNLEADVVLTGLVPQLTTPSRDHGDLVDIWFGLQWRERDAEWAEAFARLAKAWRSDAHGPSCFDLFSYAANCGLIVARRVSAEVGAWGQVEEQARILVGRVNRDMRERRRTPSAPDGTSRGWTLRVRGASSGLLASLRWMSEPKHALPSVVPELPIQLPRSSPTTSP*